The principal investigators (PIs) involved with Inproteo bring a wide range of expertise and experience to their collaborations in proteomics, and have already contributed publications to many areas of science. Comprehensive listings of the PI’s existing publications can be found on their individual websites, but selected citations can be seen below by clicking on any PI's name.

Dr. Dor Ben-Amotz
(http://www.chem.purdue.edu/bendor/)

Dr. Graham Cooks
(http://www.chem.purdue.edu/cooks/)

Dr. John Hale

Dr. Milos Novotny
(http://www.chem.indiana.edu/personnel/faculty/novotny/novotny.htm)

Dr. James Reilly
(http://www.chem.indiana.edu/personnel/faculty/reilly/reilly.htm)

Dr. Vladimir Shalaev
(http://www.ece.purdue.edu/~shalaev/)

Dongmao Zhang, Melissa F. Mrozek, Yong Xie and Dor Ben-Amotz, "Chemical Segregation and Reduction of Raman Background Interference using Drop Coating Deposition," Appl. Spectrosc., in press. (2004).

Dongmao Zhang, Corasi Ortiz, Yong Xie, V. Jo Davisson and Dor Ben-Amotz, "Detection of the Site of Phosphorylation in a Peptide using Raman Spectroscopy and Partial Least Squares Discriminant Analysis," Spectr. Chim. Acta A, in press.

Corasi Ortiz, Dongmao Zhang, Yong Xie, V. Jo Davisson, and Dor Ben-Amotz, "Identification of Insulin Variants using Raman Spectroscopy," Anal. Biochem., 332, 245-252 (2004).

Yong Xie, Dongmao Zhang, Gotam Jarori, V. Jo Davisson and Dor Ben-Amotz, "Raman Detection of Peptide Tyrosine Phosphorylation," Anal. Biochem., 332, 116-121 (2004).

M. F. Mrozek, D. Zhang and D. Ben-Amotz, "Oligosaccharide Identification and Mixture Quantitation using Raman Spectroscopy and Chemometric Analysis," Carbohydrate Research, 339, 141-45 (2004).

D. Zhang, Y. Xie, M. F. Mrozek, C. Ortiz, V. J. Davisson and D. Ben-Amotz, "Raman Detection of Proteomic Analytes," Anal.Chem., 75, 5703 (2003).

V. P. Drachev, M. Thoreson, E. Khaliullin, A. K. Sarychev, D. Zhang, D. Ben-Amotz, and V. M. Shalaev, "Semicontinuous silver films for protein sensing with SERS," SPIE proceedings, v. 5221, 76-81 (2003).

D. Zhang and D. Ben-Amotz, "Removal of Cosmic Spikes from Hyper-Spectral Images using a Hybrid Upper Bound Spectrum Method", Appl. Spectrosc., 56, 91- 98 (2002).

B. L. McClain and D. Ben-Amotz,“Global Quantitation of the Solvent Effects on the Isomerization Thermodynamics of 1,2-dichloroethane and trans-1,2-dichlorocyclohexane,” J. Phys. Chem. B, 106, 7882-88 (2002).

Brian L. McClain and Dor Ben-Amotz, “Perturbed Hard-Body Fluid Theoretical Analysis of Solvent Effects on the Isomerization of 1,2-Dichloroethane and trans-1,2-Dichlorocyclohexane,” J. Chem. Phys., 117, 6590-98 (2002).

Dor Ben-Amotz, Alan Gift, R. D. Levine, “Improved Corresponding States Scaling of the Equations of State of Simple Fluids,“ J. Chem. Phys., 117, 4632-34 (2002).

K. N. Jallad, A. Erdemir and D. Ben-Amotz, “Raman Chemical Imaging of Tribological Surfaces,” STLE Tribology Trans., 45, 239-245 (2002).

K. N. Jallad and D. Ben-Amotz, “Raman Chemical Imaging of Tribological Nitride Coated (TiN, TiAlN) Surfaces,” Wear, 252, 956-969 (2002).

K. N. Jallad and D. Ben-Amotz, " Chemical imaging of iron oxides and oxyhydroxides using near infrared Raman imaging microscopy," Mater. Sci. Tech. Ser. 17, 1479-1486 (2001).

M. M. McGuire, K. N. Jallad, D. Ben-Amotz and R. J. Hammers, "Chemical Mapping of Elemental Sulfur on Pyrite and Arsenopyrite Surfaces using Near-Infrared Raman Imaging Microscopy," Appl. Surf. Sci., 178, 105-115 (2001).

B. L. McClain, H. G. Hedderich, A. D. Gift, D. Zhang, K. N. Jallad, K. S. Haber, J. Ma and D. Ben-Amotz "Fast Chemical Imaging," Spectroscopy (Feature Article), Sept. 2000, vol. 15(9) p. 28-37.

D. Zhang and D. Ben-Amotz, "Enhanced Chemical Classification of Raman Images with of Strong Fluorescence Interference," Appl. Spectrosc., 54 (2000) 1379-83.

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Rodinei Augusti, Maciej Turowski and R. Graham Cooks, “Membrane introduction mass spectrometry for monitoring complexation equilibria of ?-cyclodextrin with substituted benzenes”, Analyst, 2003, 128, 61 - 64.

Zoltan Takats, Sergio C. Nanita, Gitta Schlosser, Karoly Vekey and R. Graham Cooks "Amino Acid Clusters Formation by Sonic Spray Ionization", Anal. Chem. 2003, 75, 1514 -1523.

Lianming Wu, Rebecca L. Clark, and R. Graham Cooks, “Chiral Quantification of D-, L-, and meso-Tartaric Acid Mixtures Using a Three-Point Calibration Kinetic Method”, Chem. Commun., 2003, 137, 136-137.

Hao Chen, Xubin Zheng, R. Graham Cooks, “Ketalization of Phosphonium Ions by 1, 4-Dioxane: Selective Detection of the Chemical Warfare Agent Simulant DMMP in Mixtures Using Ion/Molecule Reactions” J. Am. Soc. Mass Spectrom. 14 182 – 188 (2003)

Lianming Wu and R. Graham Cooks, “Chiral Analysis Using the Kinetic Method with Optimized Fixed Ligands: Application to Some Antibiotics” Anal. Chem. 2003, 75, 678 - 684.

Lianming Wu, W. Andy Tao and R. Graham Cooks, “Kinetic Method for the Simultaneous Chiral Analysis of Different Amino Acids in Mixtures” J. Mass Spectrom. 2003, 38, 386 - 393.

Tenna Aggerholm, Sergio C. Nanita, Kim J. Koch, and R. G. Cooks, "Clustering of Nucleosides in the Presence of Alkali Metals. Biologically Relevant Quartets of Guanosine, Deoxyguanosine and Uridine Observed by Electrospray Ionization Tandem Mass Spectrometry”, J. Mass Spectrom. 2003 38 87 -97

W. Andy Tao and R. Graham Cooks, "Chiral Analysis by Mass Spectrometry" Anal. Chem. 75, 25A – 31A (2003).

L. Wu, J. W. Denault, R. G. Cooks, L. Drahos, and K.Vékey, titled “Alkali Halide Cluster Dissociation Examined by the Kinetic Method: Heterolytic Bond Dissociation Energies, Effective Temperatures and Entropic Effects” J. Am. Soc. Mass Spectrom. 2002, 13, 1388-1395.

Leah S. Riter, Brian C. Laughlin, Eugene Nikolaev and R. Graham Cooks, “Direct Analysis of Volatile Organic Compounds in Human Breath using a Miniaturized Cylindrical Ion Trap Mass Spectrometer with a Membrane Inlet”, Rapid Commun. Mass Spectrom., 2002, 16, 2370-2373.

Chris Evans, Nathan Wade, Federico Pepi, Greg Strossman, Tom Schuerlein and R. Graham Cooks, "Surface Modification and Patterning using Low Energy Ion Beams: Si-O Bond Formation at the Vacuum/Adsorbate Interface” Anal. Chem. 74, 317-323 (2002).

Lianming Wu, W. Andy Tao, and R. G. Cooks, “Ligand and Metal Ion Effects in Metal Ion Clusters Used for Chiral Analysis of ?-Hydroxy Acids by the Kinetic Method”, Analytical and Bioanalytical Chemistry, 373, 618-627, 2002.

W. A. Tao, R. L. Clark and R. G. Cooks “Quotient Ratio Method for Quantitative Enantiomeric Determination by Mass Spectrometry” Anal. Chem. 2002, 74, 3783 - 3789.

D. V. Augusti, F. Carazza R. Augusti, W. A. Tao and R. G. Cooks, “Rapid quantitative chiral analysis of sugars by electrospray ionization tandem mass spectrometry using modified amino acids as chiral reference compounds” Anal. Chem. 2002, 74, 3458 - 3462.

Daniella V. Augusti, Rodinei Augusti, Fernando Carazza and R. Graham Cooks, “Quantitative Determination of the Enantiomeric Composition of Thalidomide Solutions by Electrospray Ionization Tandem Mass Spectrometry”, Chem. Commun., 2002, 136 - 137.

Hongyan Li, Yanan Peng, Wolfgang R. Plass and R. Graham Cooks, “Chemical Mass Shifts in Quadrupole Ion Traps as Characteristic Features of Nitroaromatic Compounds” Int. J. Mass Spectrom. in press.

Hongyan Li, Wolfgang Plass, Garth E. Patterson and R. Graham Cooks, “Chemical Mass Shifts in Resonance Ejection Experiments in Quadrupole Ion Traps”, J. Mass Spectrom. 2002 37 1051 – 1058

N. Wade, C. Evans, S. Jo, and R. G. Cooks, "Silylation of an OH-Terminated Self-Assembled Monolayer Surface through Low-Energy Collisions of Ions: A Novel Route to Synthesis and Patterning of Surfaces" J. Mass Spectrom. 37 591-602 (2002).

Kim J. Koch, Fabio C. Gozzo, Sergio Nanita, Z. Takats, Marcos N. Eberlin, and R. Graham Cooks" Chiral Transmission between Amino Acids: Chirally-Controlled Amino Acid Substitution in the Serine Octamer as a Possible Step in Homochirogenesis " Angew. Chem. Int Ed..41 1721 – 1724 (2002).

Garth E. Patterson‡, Andrew J. Guymon, Leah S. Riter, Mike Everly, Jens Griep-Raming, Brian C. Laughlin, Zheng Ouyang, and R. Graham Cooks, “A Miniature Cylindrical Ion Trap Mass Spectrometer” Anal. Chem. 2002, 74, 6145 - 6153.

Leah S. Riter, Yanan Peng, Robert J. Noll, Garth E. Patterson‡, Tenna Aggerholm and R. Graham Cooks, “Analytical Performance of a Miniature Cylindrical Ion Trap Mass Spectrometer”, Anal. Chem. 2002, 74, 6154 - 6162.

X. Zheng and R. Graham Cooks, “Thermochemical Determinations by the Kinetic Method with Direct Entropy Correction”, J. Phys. Chem. A 2002, 106, 9939 - 9946

Thomas A. Blake, Xubin Zheng, Tenna Aggerholm,‡ Frants R. Lauritsen‡ and R. Graham Cooks, “Pentachlorophenol Analysis by Negative Ion Chemical Ionization with Membrane Introduction Mass Spectrometry” The Analyst, 2002, 127 1463 - 1466.

Zheng Ouyang, Verena Grill, Jormarie Alvarez, Christopher H. Doerge, Luca Gianelli, Peter Thomas, Henry W. Rohrs, R. Graham Cooks, "QoqoQ Tandem Mass Spectrometer for the Study of Ion/Surface Collision Processes", Rev. Sci. Instrum. 2001, 72, 3149-4179 .

Taufika Islam Williams, Jeff W. Denault and R. Graham Cooks, "Proton Affinity of Deuterated Aceonitrile Estimated by the Kinetic Method with Full Entropy Analysis" Int. J. Mass Spectrom. 210/211 (2001) 133 -146.

W. Andy Tao, Eugene N. Nikolaev, R. Graham Cooks, “Chiral Preferences in the Dissociation of Homogeneous Amino Acid/ Metal Ion Clusters”, Eur. Mass Spectrom. in press.

X. Zheng, R. Augusti, W. A. Tao and R. G. Cooks “The Kinetic Method: Thermochemical Determinations and Chiral Analysis” Encyclopedia of Mass Spectrometry, (eds. R. M. Caprioli and M. L. Gross), vol. 5 Chemistry and Physics of Gaseous Ions (ed. P. B. Armentrout), John Wiley and Sons, Chichester, UK, in press.

Xubin Zheng, W. Andy Tao, R. Graham Cooks, “Enantiomeric Excess Quantification by Mass Spectrometry”, J. Chem. Educ. Submitted

R. Graham Cooks, Verena Grill, Nathan Wade, Sung-Chan Jo and Bodgan Gologan,"Collisions of Ions with Surfaces at Hyperthermal Energies” Encyclopedia of Mass Spectrometry, (eds. R. M. Caprioli and M. L. Gross), vol. 5 Chemistry and Physics of Gaseous Ions (ed. P. B. Armentrout), John Wiley and Sons, Chichester, UK, in press.

Wolfgang R. Plass,† Hongyan Li, and R. Graham Cooks, “Theory, Simulation and Measurement of Chemical Mass Shifts in RF Quadrupole Ion Traps”, Int. J. Mass Spectrom. in press.

Wolfgang R. Plass and R. Graham Cooks, “A Model for Inelastic Molecular Collisions at Steady State or Non-Steady State with an Arbitrary Distribution of Collision Energies” Int. J. Mass Spectrom. in press.

Rodinei Augusti, Xubin Zheng, M. Turowski, and R. Graham Cooks, “Kinetic Isotope and Collision Energy Effects in the Dissociation of Chloride and Bromide Adducts of Aliphatic Alcohols, Benzaldehyde and 2,4-Pentanedione, Australian J. Chem.”, in press.

Ethan R. Badman and R. Graham Cooks "A Parallel Miniature Ion Trap Array", Anal. Chem. 72, 3291-3297 (2000).

W. Andy Tao, Duxi Zhang, Feng Wang, Peter D. Thomas and R. Graham Cooks, "Kinetic Resolution of D, L-Amino Acids Based on Gas-Phase Dissociation of Copper(II) Complexes" Anal.Chem. 71, 4427-4429 (1999).

S. A. Miller, H. Luo, S. J. Pachuta and R. G. Cooks, "Soft-Landing of Polyatomic Ions at Fluorinated Self-Assembled Monolayer Surfaces", Science 275, 1447-1450 (1997).

R. G. Cooks, T. Ast, T. Pradeep and V. Wysocki, "Reactions of Ions with Organic Surfaces" Accounts Chem. Research 27, 316 - 323 (1994).

P. H. Hemberger, N. S. Nogar, J. D. Williams, R. G. Cooks, and P. E. P. Syka, "Laser Photodissociation Probe for Ion Tomography Studies in a Quadrupole Ion Trap Mass Spectrometer" Chem. Phys. Letters 191, 405 - 410 (1992).

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Dr. John Hale

Wroblewski, VJ, Witcher, DR, Becker, GW, Davis, KA, Dou, S, Micanovic, R., Newton, CM, Noblitt, TW, Richardson, JM, Song, HY, Hale, JE Decoy receptor 3 (DcR3) is proteolytically processed to a metabolic fragment having differential activities against Fas ligand and LIGHT (2003) Biochemical Pharmacology. 65, 657-667.

Konrad RJ. Zhang F. Hale JE. Knierman MD. Becker GW. Kudlow JE. Alloxan is an inhibitor of the enzyme O-linked N-acetylglucosamine transferase. (2002) Biochemical & Biophysical Research Communications. 293(1):207-12.

Becker, G.W., Knierman, M.D., Shiyanov, P., Hale, J.E. Proteomics. (2002) Handbook of Industrial Cell Culture: Mammalian, Microbial, and Plant Cells. 321-348.

Habeck, L.L., Belagaje, R.M., Becker, G.W., Hale, J.E., Churgay, L.M., Ulmer, M., Yang, X., Shackelford, K.A., Richardson, J.M., Johnson, M.G., Mendelsohn, L.G.(2001) Expression, purification, and characterization of active recombinant prostate-specific antigen in Pichia pastoris (yeast). The Prostate 46 298-306.

Krishnan, S., Hale, J.E., Becker, G.W. Proteomics: Chromatographic fractionation prior to 2-dimensional polyacrylamide gel electrophoresis for enrichment of low abundance proteins facilitating identification by mass spectrometric methods. (2001) Enzyme Technology for Pharmaceutical and Biotechnological Applications. Kirst HA, Yeh, WK, Zmijewski, MJ eds. Marcel Dekker, New York, NY. 575-596.

Konrad RJ., Tolar JF., Hale JE., Knierman MD., Becker GW., Kudlow JE. Purification of the O-glycosylated protein p135 and identification as O-GlcNAc transferase. (2001) Biochemical & Biophysical Research Communications. 288(5):1136-1140.

Onyia, J.E., Miles, R.R, Yang, X., Halladay, D.L., Hale, J., Glasebrook, A., McClure, D., Seno, G., Churgay, L., Chandrasekhar, S., Martin, T.J. (2000) In vivo demonstration that human parathyroid hormone 1-38 inhibits the expression of osteoprotegerin in bone with the kinetics of an immediate early gene. J. Bone Miner. Res. 15 863-871.

Hale, J.E., Butler, J.P., Knierman, M.D., Becker G.W. (2000) Increased sensitivity of tryptic peptide detection by MALDI-TOF mass spectrometry is achieved by conversion of lysine to homoarginine. Analytical Biochemistry 287 (1) 110-117.

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Dr. Milos Novotny
(http://www.chem.indiana.edu/personnel/faculty/novotny/novotny.htm)

A. Que and M.V. Novotny, “Structural Characterization of Neutral Oligosaccharide Mixtures through Combination of Capillary Electrochromatography/Ion Trap Tandem Mass Spectrometry,” Anal. & Bioanal. Chem. 375, 599-608 (2003).

J.A. Starkey, Y. Mechref, C.K. Byun, R. Steinmetz, O.H. Pescovitz, M.V. Novotny, “Determination of Trace Isoflavonoid Phytoestrogens in Biological Materials by Capillary Electrochromatography,” Anal. Chem. 74 5998-6005 (2003).

S.D. Sharrow, M.V. Novotny and M.J. Stone “Thermodynamic Analysis Enthalpy-Driven ‘Hydrophobic’ Binding Between Mouse Major Urinary Protein-I and the Pheromone 2-sec-Butyl-4,5-dihydrothiazole,” Biochemistry 42, 6302-6309 (2003).

A.H. Que, Y. Mechref, Y. Huang, J.A. Taraszka, D.E. Clemmer, and M.V. Novotny, “Coupling Capillary Electrochromatography with Fourier-Transform Mass Spectrometry in Characterizing Complex Oligosaccharide Pools,” Anal. Chem. 75, 1684-1690 (2003).

Y. Huang, T. Konse, Y. Mechref, and M.V. Novotny, “Matrix-assisted Laser Desorption/Ionization Mass Spectrometry Compatible b-Elimination of O-Linked Oligosaccharides,” Rapid Comm. in Mass Spectrom.16, 1199-1204 (2002).

Y. Mechref and M.V. Novotny, “Structural Investigations of Glycoconjugates at High Sensitivity” Chemical Reviews 102(2) 321-370 (2002).

S.D. Sharrow, J. L. Vaughn, L. Zidek, M.V. Novotny, “Pheromone Binding by Polymorphic Mouse Major Urinary Proteins,” Protein Science 11, 2247-2256 (2002).

A.H. Que and M. V. Novotny, “Separation of Neutral Saccharide Mixtures with Hydrophilic-phase Capillary Electrochromatography using Monolithic Columns,” Anal. Chem. 74, 5784-5191 (2002).

M. Sam, S. Vora, B. Malnic, W. Ma, M. V. Novotny, and L. B. Buck, “Odorants May Arouse Instinctive Behaviours,” Nature 12, 142 (2001).

D. E. Timm, L.J. Baker, H. Mueller, L. Zidek, M.V. Novotny, Structural basis of pheromone binding to mouse major urinary protein (MUP-I),” Protein Science 10, 997-1004 (2001).

Y. Huang, Y. Mechref and M.V. Novotny, “Microscale Nonreductive Release of O-Linked Glycans for Subsequent Analysis through MALDI/TOF Mass Spectrometry and Capillary Electrophoresis,” Anal. Chem. 73, 6063-6069, (2001).

M. Hong, A. Cassely, Y. Mechref and M.V. Novotny, “Sugar-Lectin Interactions Investigated through Affinity Capillary Electrophoresis,” J. Chromatogr. B. 752, 207-216 (2001).

E. Landberg, Y. Huang, M. Sromqvist, Y. Mechref, L. Hansson, A. Lundblad, M.V. Novotny and P. Pahlsson, “Changes in Glycosylation of Human Bile-Salt-Stimulated Lipase During Lactation,” Arch. Biochem. Biophys. 377, 246-254 (2000).

T. Leinders-Zufall, A. P. Lane, A. C. Puche, W. Ma, M. V. Novotny, M. T. Shipley and F. Zufall, “Ultrasensitive and Selective Detection of Putative Pheromones by Mammalian Vomeronasal Neurons,” Nature 405, 792-796, (2000).

S. Wiedmer, A. Cassely, M. Hong, M.V. Novotny, and M-L. Riekkola, “Electrophoretic Studies of Polygalacturonate Oligomers and their Interactions with Metal Ions,” Electrophoresis 21, 3212-3219 (2000).

A. Que, T. Konse, A. G. Baker, M. V. Novotny, “Analysis of Bile Acids and their Conjugates by Capillary Electrochromatography/Electrospray Ion Trap Mass Spectrometry,” Anal. Chem. 72, 2703-2710 (2000).

Y. Mechref, L. Zidek, W. Ma, and M. V. Novotny, “Glycosylated Major Urinary Protein of the House Mouse: Characterization of its N-linked Oligosaccharides,” Glycobiology 10, 1-5, (2000).

Y. Huang, Y. Mechref, J. Tian, H. Gong, W. Lennarz. M.V. Novotny, “A Simple Sample Preparation for Enhancing the Selectivity of Mass-Spectrometric Oligosaccharide Determination through the Use of an Adsorptive Hydrophobic Resin,” Rapid Comm. in Mass Spectrom. 14, 1233-1237 (2000).

Y. Mechref, H. Gong, W. Ma, and M. V. Novotny,“N-linked Oligosaccharides of Vomeromodulin, a Putative Pheromone Transporter in Rat,” Biochem. Biophys. Res. Commun. 255, 451-455 (1999).

A.G. Baker, A. Alexander, M.V. Novotny, “A Narrow-Band Collisional Activation Technique for Ion Trap Mass Spectrometers,” Anal. Chem. 71, 2945-2950 (1999).

L. Zidek, M. V. Novotny, and M. J. Stone, “Increased Protein Backbone Conformational Entropy upon Hydrophobic Ligand Binding,” Nature Structural Biology 6, 1118-1121 (1999).

A.G. Baker, D. Wiesler, and M.V. Novotny, “Tandem Mass Spectrometry of Model Peptides Modified with trans-2-Hexenal, a Product of Lipid Peroxidation,” J. Am. Soc. Mass Spectrometry 10 613-624 (1999).

L. Zidek, M.J. Stone, S.M. Lato, A.D. Ellington, and M.V. Novotny, “NMR Mapping of Recombinant Mouse Major Urinary Protein I Binding Site Occupied by a Pheromone, 2-sec.Butyl-4,5-Dihydrothiazole,” Biochemistry 31, 9850-9861 (1999).

Y. Mechref, P. Chen and M. V. Novotny, “Structure Characterization of the N-Linked Oligosaccharides in Bile Salt-Stimulated Lipase Originated from Human Breast Milk,” Glycobiology 9, 227-234 (1999).

A. Baker, L. Zidek, D. Wiesler, J. Chmelik, M. Pagel and M. V. Novotny, “Reaction of N-Acetyl-Glycyl-Lysyl-Methyl Ester with 2-Alkenals: An Alternative Model for Covalent Modification of Proteins,” Chem. Res. Toxicol. 11, 730-740 (1998).

Y. Mechref and M. V. Novotny, “Mass-Spectrometric Mapping and Sequencing of N-linked Oligosaccharides Derived from Submicrogram Amounts of Glycoproteins,” Anal. Chem. 70, 455-463 (1998).

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R.L. Beardsley and J.P. Reilly, “Quantitation using enhanced signal tags: a technique for comparative proteomics”, J. Proteomics Res. 2, 17-21 (2003)

R.J. Arnold and J.P. Reilly, "Analysis of methylation and acetylation in E. coli ribosomal proteins", in Posttranslational Modifications of Proteins: Tools for Functional Proteomics, edited by Christoph Kannicht, Chapter 13, 205-210 (Humana Press, Totowa, NJ, Methods in Molecular Biology Series 2002).

R. L. Beardsley and J.P. Reilly, "Optimization of guanidination procedures for MALDI mass mapping", Anal. Chem. 74, 1884-1890 (2002).

M.M.E. Ireland, J.A. Karty, E.M. Quardokus, J.P. Reilly and Y.V. Brun, "Proteomic analysis of the Caulobacter crescentus stalk indicates competence for nutrient uptake", Mol. Microbiol. 45, 1029-1041 (2002).

J.A. Karty, M.M.E. Ireland, E.M. Quardokus, Y.V. Brun and J.P. Reilly, "Defining absolute confidence limits in the identification of Caulobacter proteins by peptide mass mapping", J. Proteome Res. 1, 325-335 (2002).

W.A. Harris and J.P. Reilly, "On-probe digestion of bacterial proteins for MALDI-MS", Anal. Chem. 74, 4410-4416 (2002).

A.J. Moad, L.J. Klein, D.G. Peters, J.A. Karty, J.P. Reilly, “Catalytic reduction of ethyl chloroacetate by cobalt(I) salophen electrogenerated at vitreous carbon cathodes”, J. Electroanal. Chem. 531, 163-169 (2002).

J.A. Karty, M.M.E. Ireland, Y.V. Brun and J.P. Reilly, "Artifacts and unassigned masses encountered in peptide mass mapping", J. Chromatogr. B. 782, 363-383 (2002).

W.A. Harris, D.J. Janecki, and J.P. Reilly, "Use of matrix clusters and trypsin autolysis fragments as mass calibrants in MALDI-TOF", Rapid Commun. Mass Spectrom. 16, 1714-1722 (2002).

N.P. Christian, V.R. Mokler, F.E. Wincott, A.D. Ellington and J.P. Reilly, “Elucidation of the initial step of oligonucleotide fragmentation in MALDI using modified nucleic acids”, J. Am. Soc. Mass Spectrom. 12, 744-753 (2001).

N.P. Christian, A.W. Alexander and J.P. Reilly, “Design and evaluation of a low-cost and high-speed signal amplifier” Rev. of Sci. Instrum. 27, 243-246 (2001).

C. Ji, D.G. Peters, J.A. Karty, J.P. Reilly, and M.S. Mubarak, “Direct and Cobalt(I) salen-catalyzed reduction of 2, 6-Bis(chloromethyl)pyridine at carbon cathodes in acetonitrile”, J. Electroanal. Chem. 516, 50-58 (2001).

S. Lee, T. Carlson, N.P. Christian, K. Lea, J. P. Reilly, J. J. Bonner, “The Yeast Heat Shock factor changes conformation in response to superoxide and temperature”, Mol. Biol. of the Cell 11, 1753-1764 (2000).

C.T. Houston and J.P. Reilly, “Photoionization studies of chromophore-labeled amino acids and peptides”, J. Phys. Chem. A, 104, 10383-10391 (2000).

A.N. Gashti, J.C. Huffman, A. Edwards, G. Szekeley, A.R. Siedle, J.A. Karty, J.P. Reilly, L.J. Todd, “Fluorination studies of the [commo-3,3¢-Co(3,1,2-CoC2B9H11)2-1] ion”, J. Organometallic Chem., 614-615, 120-124 (2000).

R. J. Arnold and J. P. Reilly, “Observation of tetrahydrofolyl-poly-glutamic acid in bacteria cells by Matrix-Assisted Laser Desorption/Ionization Mass Spectrometry”, Analytical Biochem. 281, 45-54 (2000).

N.P. Christian, R.J. Arnold and J.P. Reilly, “Improved calibration of time-of-flight mass spectra by simplex optimization of electrostatic ion calculations”, Anal. Chem. 72, 3327-3337(2000).

C.T. Houston, W.P. Taylor, T.S. Widlanski and J.P. Reilly, “Investigation of enzyme kinetics using quench-flow techniques with MALDI-TOF mass spectrometry”, Anal. Chem. 72, 3311-3319 (2000).

R. Beardsley, J.A. Karty and J.P. Reilly, “Enhancing the intensities of lysine-terminated tryptic peptide ions in MALDI mass spectrometry”, Rapid Commun. Mass Spectrom. 14, 2147-2153 (2000).

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Vladimir M. Shalaev, Optical Properties of Fractal Composites, Chapter in: Optical Properties of Nanostructured Random Media, edited by Vladimir M. Shalaev (Springer Verlag, Topics in Applied Physics, Berlin Heidelberg, 2002).

Vladimir M. M. Shalaev, Fractal Nano-Composites: Giant Local-Field Enhancement of Optical Responses; Chapter in Nanoscale Linear and Nonlinear Optics, edited by M. Bertolotti, et al. (American Institute of Physics, 2001).

A.K. Sarychev and V. M. Shalaev, “Electromagnetic field fluctuations and optical nonlinearities in metal-dielectric composites” Physics Reports, 335, 275 (2000).

Vladimir M. Shalaev, Nonlinear Optics of Random Media: Fractal Composites and Metal-Dielectric Films (Springer Tracts in Modern Physics, v.158, Springer, Berlin Heidelberg, 2000).

W. Kim, V. P. Safonov, Vladimir M. Shalaev, R. L. Armstrong, Fractals in Microcavities: Giant Coupled Multiplicative Enhancement of Optical Responses, Physical Review Letters, 82, 4811 (1999).

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